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1

[Lecture Notes in Computer Science] Supercomputing Frontiers Volume 10776 || HBasechainDB – A Scalable Blockchain Framework on Hadoop Ecosystem

Yokota, Rio, Wu, Weigang

Year:

2018

Language:

english

File:

PDF, 768 KB

english, 2018

2

[Lecture Notes in Computer Science] High Performance Computing Volume 11203 (ISC High Performance 2018 International Workshops, Frankfurt/Main, Germany, June 28, 2018, Revised Selected Papers) || Interactive Distributed Deep Learning with Jupyter Notebooks

Yokota, Rio, Weiland, Michèle, Shalf, John, Alam, Sadaf

Year:

2018

Language:

english

File:

PDF, 1.14 MB

english, 2018

3

Comparing the treecode with FMM on GPUs for vortex particle simulations of a leapfrogging vortex ring

Rio Yokota, L.A. Barba

Journal:

Computers & Fluids

Year:

2011

Language:

english

File:

PDF, 837 KB

english, 2011

4

[IEEE 2012 SC Companion: High Performance Computing, Networking, Storage and Analysis (SCC) - Salt Lake City, UT (2012.11.10-2012.11.16)] 2012 SC Companion: High Performance Computing, Networking Storage and Analysis - A Task Parallel Implementation of Fast Multipole Methods

Taura, Kenjiro, Nakashima, Jun, Yokota, Rio, Maruyama, Naoya

Year:

2012

Language:

english

File:

PDF, 203 KB

english, 2012

5

[IEEE 2014 IEEE International Parallel & Distributed Processing Symposium Workshops (IPDPSW) - Phoenix, AZ, USA (2014.5.19-2014.5.23)] 2014 IEEE International Parallel & Distributed Processing Symposium Workshops - Scalable Fast Multipole Accelerated Vortex Methods

Hu, Qi, Gumerov, Nail A., Yokota, Rio, Barba, Lorena, Duraiswami, Ramani

Year:

2014

Language:

english

File:

PDF, 736 KB

english, 2014

6

[Lecture Notes in Computer Science] High Performance Computing Volume 10524 || A Survey of Fast Packet I/O Technologies for Network Function Virtualization

Kunkel, Julian M., Yokota, Rio, Taufer, Michela, Shalf, John

Year:

2017

Language:

english

File:

PDF, 253 KB

english, 2017

7

[Lecture Notes in Computer Science] High Performance Computing Volume 10524 || Performance Evaluation of NWChem Ab-Initio Molecular Dynamics (AIMD) Simulations on the Intel® Xeon Phi™ Processor

Kunkel, Julian M., Yokota, Rio, Taufer, Michela, Shalf, John

Year:

2017

Language:

english

File:

PDF, 1.25 MB

english, 2017

8

[Lecture Notes in Computer Science] High Performance Computing Volume 10876 || Distributed Deep Reinforcement Learning: Learn How to Play Atari Games in 21 minutes

Yokota, Rio, Weiland, Michèle, Keyes, David, Trinitis, Carsten

Year:

2018

Language:

english

File:

PDF, 986 KB

english, 2018

9

[ACM Press the 48th International Conference - Kyoto, Japan (2019.08.05-2019.08.08)] Proceedings of the 48th International Conference on Parallel Processing: Workshops - ICPP 2019 - Performance Optimizations and Analysis of Distributed Deep Learning with Approximated Second-Order Optimization Method

Tsuji, Yohei, Osawa, Kazuki, Ueno, Yuichiro, Naruse, Akira, Yokota, Rio, Matsuoka, Satoshi

Year:

2019

File:

PDF, 452 KB

2019

10

[IEEE 2019 IEEE 13th International Symposium on Embedded Multicore/Many-core Systems-on-Chip (MCSoC) - Singapore, Singapore (2019.10.1-2019.10.4)] 2019 IEEE 13th International Symposium on Embedded Multicore/Many-core Systems-on-Chip (MCSoC) - Optimization of Numerous Small Dense-Matrix–Vector Multiplications in H-Matrix Arithmetic on GPU

Ohshima, Satoshi, Yamazaki, Ichitaro, Ida, Akihiro, Yokota, Rio

Year:

2019

File:

PDF, 539 KB

2019

11

PetRBF — A parallel O(N) algorithm for radial basis function interpolation with Gaussians

Rio Yokota, L.A. Barba, Matthew G. Knepley

Journal:

Computer Methods in Applied Mechanics and Engineering

Year:

2010

Language:

english

File:

PDF, 772 KB

english, 2010

12

Biomolecular electrostatics using a fast multipole BEM on up to 512 gpus and a billion unknowns

Rio Yokota, Jaydeep P. Bardhan, Matthew G. Knepley, L.A. Barba, Tsuyoshi Hamada

Journal:

Computer Physics Communications

Year:

2011

Language:

english

File:

PDF, 1.13 MB

english, 2011

13

Highly enantioselective reduction of symmetrical diacetylaromatics with baker's yeast

Masahiko Uchiyama, Nobuo Katoh, Rio Mimura, Naoko Yokota, Yuki Shimogaichi, Makoto Shimazaki, Akihiro Ohta

Journal:

Tetrahedron: Asymmetry

Year:

1997

Language:

english

File:

PDF, 530 KB

english, 1997

14

Microbial demetallization of crude oil: Nickel protoporphyrin disodium as a model organo-metallic substrate

Gina Rio Dedeles, Ayumi Abe, Katsuichi Saito, Kozo Asano, Kouichi Saito, Atsushi Yokota, Fusao Tomita

Journal:

Journal of Bioscience and Bioengineering

Year:

2000

Language:

english

File:

PDF, 848 KB

english, 2000

15

Coupling endoplasmic reticulum stress to the cell death program: role of the ER chaperone GRP78

Rammohan V. Rao, Alyson Peel, Anna Logvinova, Gabriel del Rio, Evan Hermel, Takanori Yokota, Paul C. Goldsmith, Lisa M. Ellerby, H.Michael Ellerby, Dale E. Bredesen

Journal:

Year:

2002

Language:

english

File:

PDF, 523 KB

english, 2002

16

FMM-based vortex method for simulation of isotropic turbulence on GPUs, compared with a spectral method

Yokota, Rio, Barba, L.A.

Journal:

Computers & Fluids

Year:

2013

Language:

english

File:

PDF, 1.38 MB

english, 2013

17

Petascale turbulence simulation using a highly parallel fast multipole method on GPUs

Yokota, Rio, Barba, L.A., Narumi, Tetsu, Yasuoka, Kenji

Journal:

Computer Physics Communications

Year:

2013

Language:

english

File:

PDF, 938 KB

english, 2013

18

Petascale molecular dynamics simulation using the fast multipole method on K computer

Ohno, Yousuke, Yokota, Rio, Koyama, Hiroshi, Morimoto, Gentaro, Hasegawa, Aki, Masumoto, Gen, Okimoto, Noriaki, Hirano, Yoshinori, Ibeid, Huda, Narumi, Tetsu, Taiji, Makoto

Journal:

Computer Physics Communications

Year:

2014

Language:

english

File:

PDF, 1.07 MB

english, 2014

19

[IEEE 2012 11th International Symposium on Parallel and Distributed Computing (ISPDC) - Munich, Germany (2012.06.25-2012.06.29)] 2012 11th International Symposium on Parallel and Distributed Computing - Scalable Force Directed Graph Layout Algorithms Using Fast Multipole Methods

Yunis, Enas, Yokota, Rio, Ahmadia, Aron

Year:

2012

Language:

english

File:

PDF, 251 KB

english, 2012

20

Data-driven execution of fast multipole methods

Ltaief, Hatem, Yokota, Rio

Journal:

Concurrency and Computation: Practice and Experience

Year:

2014

Language:

english

File:

PDF, 778 KB

english, 2014

21

[IEEE 2012 SC Companion: High Performance Computing, Networking, Storage and Analysis (SCC) - Salt Lake City, UT (2012.11.10-2012.11.16)] 2012 SC Companion: High Performance Computing, Networking Storage and Analysis - Abstract: Scalable Fast Multipole Methods for Vortex Element Methods

Qi Hu,, Nail A. Gumerov,, Rio Yokota,, Lorena Barba,, Ramani Duraiswami,

Year:

2012

Language:

english

File:

PDF, 141 KB

english, 2012

22

[IEEE 2012 SC Companion: High Performance Computing, Networking, Storage and Analysis (SCC) - Salt Lake City, UT (2012.11.10-2012.11.16)] 2012 SC Companion: High Performance Computing, Networking Storage and Analysis - Poster: Scalable Fast Multipole Methods for Vortex Element Methods

Qi Hu,, Nail A. Gumerov,, Rio Yokota,, Lorena Barba,, Ramani Duraiswami,

Year:

2012

Language:

english

File:

PDF, 465 KB

english, 2012

23

[ACM Press the Conference - Portland, Oregon (2009.11.14-2009.11.20)] Proceedings of the Conference on High Performance Computing Networking, Storage and Analysis - SC '09 - 42 TFlops hierarchical N -body simulations on GPUs with applications in both astrophysics and turbulence

Hamada, Tsuyoshi, Narumi, Tetsu, Yokota, Rio, Yasuoka, Kenji, Nitadori, Keigo, Taiji, Makoto

Year:

2009

Language:

english

File:

PDF, 2.96 MB

english, 2009

24

Multi-level restricted maximum likelihood covariance estimation and kriging for large non-gridded spatial datasets

Castrillón-Candás, Julio E., Genton, Marc G., Yokota, Rio

Journal:

Spatial Statistics

Year:

2015

Language:

english

File:

PDF, 1.92 MB

english, 2015

25

Vortex Methods for the Simulation of Turbulent Flows: Review

YOKOTA, Rio, OBI, Shinnosuke

Journal:

Journal of Fluid Science and Technology

Year:

2011

Language:

english

File:

PDF, 2.70 MB

english, 2011

26

[IEEE 2016 IEEE 22nd International Conference on Parallel and Distributed Systems (ICPADS) - Wuhan, China (2016.12.13-2016.12.16)] 2016 IEEE 22nd International Conference on Parallel and Distributed Systems (ICPADS) - Tapas: An Implicitly Parallel Programming Framework for Hierarchical N-Body Algorithms

Fukuda, Keisuke, Matsuda, Motohiko, Maruyama, Naoya, Yokota, Rio, Taura, Kenjiro, Matsuoka, Satoshi

Year:

2016

Language:

english

File:

PDF, 615 KB

english, 2016

27

[Lecture Notes in Computer Science] High Performance Computing Volume 10266 ||

Kunkel, Julian M., Yokota, Rio, Balaji, Pavan, Keyes, David

Year:

2017

Language:

english

File:

PDF, 34.43 MB

english, 2017

28

[Lecture Notes in Computer Science] High Performance Computing Volume 10266 || Neuromapp: A Mini-application Framework to Improve Neural Simulators

Kunkel, Julian M., Yokota, Rio, Balaji, Pavan, Keyes, David

Year:

2017

Language:

english

File:

PDF, 739 KB

english, 2017

29

[Lecture Notes in Computer Science] High Performance Computing Volume 10266 || Fast Matrix-Free Discontinuous Galerkin Kernels on Modern Computer Architectures

Kunkel, Julian M., Yokota, Rio, Balaji, Pavan, Keyes, David

Year:

2017

Language:

english

File:

PDF, 3.09 MB

english, 2017

30

[Lecture Notes in Computer Science] High Performance Computing Volume 10266 || Fully Resolved Simulations of Dune Formation in Riverbeds

Kunkel, Julian M., Yokota, Rio, Balaji, Pavan, Keyes, David

Year:

2017

Language:

english

File:

PDF, 3.41 MB

english, 2017

31

[Lecture Notes in Computer Science] High Performance Computing Volume 10266 || Alleviating I/O Interference Through Workload-Aware Striping and Load-Balancing on Parallel File Systems

Kunkel, Julian M., Yokota, Rio, Balaji, Pavan, Keyes, David

Year:

2017

Language:

english

File:

PDF, 3.59 MB

english, 2017

32

[Lecture Notes in Computer Science] High Performance Computing Volume 10266 || An Overview of MPI Characteristics of Exascale Proxy Applications

Kunkel, Julian M., Yokota, Rio, Balaji, Pavan, Keyes, David

Year:

2017

Language:

english

File:

PDF, 1.85 MB

english, 2017

33

[Lecture Notes in Computer Science] High Performance Computing Volume 10266 || Tile Low Rank Cholesky Factorization for Climate/Weather Modeling Applications on Manycore Architectures

Kunkel, Julian M., Yokota, Rio, Balaji, Pavan, Keyes, David

Year:

2017

Language:

english

File:

PDF, 2.37 MB

english, 2017

34

[IEEE 2017 International Conference on High Performance Computing & Simulation (HPCS) - Genoa, Italy (2017.7.17-2017.7.21)] 2017 International Conference on High Performance Computing & Simulation (HPCS) - Accelerating Matrix Multiplication in Deep Learning by Using Low-Rank Approximation

Osawa, Kazuki, Sekiya, Akira, Naganuma, Hiroki, Yokota, Rio

Year:

2017

Language:

english

File:

PDF, 187 KB

english, 2017

35

[Lecture Notes in Computer Science] High Performance Computing Volume 10524 || Instruction Set Architectures for Quantum Processing Units

Kunkel, Julian M., Yokota, Rio, Taufer, Michela, Shalf, John

Year:

2017

Language:

english

File:

PDF, 598 KB

english, 2017

36

[Lecture Notes in Computer Science] High Performance Computing Volume 10524 || Performance Evaluation of Container-Based High Performance Computing Ecosystem Using OpenPOWER

Kunkel, Julian M., Yokota, Rio, Taufer, Michela, Shalf, John

Year:

2017

Language:

english

File:

PDF, 2.88 MB

english, 2017

37

[Lecture Notes in Computer Science] High Performance Computing Volume 10524 || JULEA: A Flexible Storage Framework for HPC

Kunkel, Julian M., Yokota, Rio, Taufer, Michela, Shalf, John

Year:

2017

Language:

english

File:

PDF, 700 KB

english, 2017

38

[Lecture Notes in Computer Science] High Performance Computing Volume 10524 || Dynamic Paging Method Switching - An Implementation for KVM

Kunkel, Julian M., Yokota, Rio, Taufer, Michela, Shalf, John

Year:

2017

Language:

english

File:

PDF, 772 KB

english, 2017

39

[Lecture Notes in Computer Science] High Performance Computing Volume 10524 || YASMIN: Efficient Intra-node Communication Using Generic Sockets

Kunkel, Julian M., Yokota, Rio, Taufer, Michela, Shalf, John

Year:

2017

Language:

english

File:

PDF, 556 KB

english, 2017

40

[Lecture Notes in Computer Science] High Performance Computing Volume 10524 || Towards an Integrated Strategy to Preserve Digital Computing Performance Scaling Using Emerging Technologies

Kunkel, Julian M., Yokota, Rio, Taufer, Michela, Shalf, John

Year:

2017

Language:

english

File:

PDF, 2.40 MB

english, 2017

41

[Lecture Notes in Computer Science] High Performance Computing Volume 10524 || Pre-exascale Architectures: OpenPOWER Performance and Usability Assessment for French Scientific Community

Kunkel, Julian M., Yokota, Rio, Taufer, Michela, Shalf, John

Year:

2017

Language:

english

File:

PDF, 522 KB

english, 2017

42

[Lecture Notes in Computer Science] High Performance Computing Volume 10524 || From Knights Corner to Landing: A Case Study Based on a Hodgkin-Huxley Neuron Simulator

Kunkel, Julian M., Yokota, Rio, Taufer, Michela, Shalf, John

Year:

2017

Language:

english

File:

PDF, 940 KB

english, 2017

43

[Lecture Notes in Computer Science] High Performance Computing Volume 10524 || From Big Data to Big Displays High-Performance Visualization at Blue Brain

Kunkel, Julian M., Yokota, Rio, Taufer, Michela, Shalf, John

Year:

2017

Language:

english

File:

PDF, 4.65 MB

english, 2017

44

Fast multipole preconditioners for sparse matrices arising from elliptic equations

Ibeid, Huda, Yokota, Rio, Pestana, Jennifer, Keyes, David

Journal:

Computing and Visualization in Science

Year:

2017

Language:

english

File:

PDF, 1.08 MB

english, 2017

45

[Lecture Notes in Computer Science] Supercomputing Frontiers Volume 10776 ||

Yokota, Rio, Wu, Weigang

Year:

2018

Language:

english

File:

PDF, 26.19 MB

english, 2018

46

[Lecture Notes in Computer Science] Supercomputing Frontiers Volume 10776 || Experiences of Converging Big Data Analytics Frameworks with High Performance Computing Systems

Yokota, Rio, Wu, Weigang

Year:

2018

Language:

english

File:

PDF, 552 KB

english, 2018

47

[Lecture Notes in Computer Science] Supercomputing Frontiers Volume 10776 || Erratum to: Machine Learning Predictions for Underestimation of Job Runtime on HPC System

Yokota, Rio, Wu, Weigang

Year:

2018

Language:

english

File:

PDF, 143 KB

english, 2018

48

[Lecture Notes in Computer Science] Supercomputing Frontiers Volume 10776 || High Performance LOBPCG Method for Solving Multiple Eigenvalues of Hubbard Model: Efficiency of Communication Avoiding Neumann Expansion Preconditioner

Yokota, Rio, Wu, Weigang

Year:

2018

Language:

english

File:

PDF, 581 KB

english, 2018

49

[Lecture Notes in Computer Science] High Performance Computing Volume 10876 || Combining HTM with RCU to Speed Up Graph Coloring on Multicore Platforms

Yokota, Rio, Weiland, Michèle, Keyes, David, Trinitis, Carsten

Year:

2018

Language:

english

File:

PDF, 938 KB

english, 2018

50

[Lecture Notes in Computer Science] High Performance Computing Volume 10876 || Hardware Performance Variation: A Comparative Study Using Lightweight Kernels

Yokota, Rio, Weiland, Michèle, Keyes, David, Trinitis, Carsten

Year:

2018

Language:

english

File:

PDF, 802 KB

english, 2018